rs29223766 SNP Detail

Summary

• ID
  rs29223766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52653313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGACTC ATCTGTTAAG
  TGAATCTGCC AGGGTTATTC AAACTTAACA TCTTCTTTAC TCTTCTATCT CTGTCACACA
  GCTAGCTGCC TTTGTTGCTT TGTTTCCCAT AGACTCTTGT CTTTCCTTAC AGTGTTTTCC
  TGTTTCTTTT TTCCCATCCT GCAACCCTCC CGTCAACACT GCATACATTA CACTAAACAT
  R
  TTTACTCAGT ATTAGACTTT TGCTATAAAT TATGTTCATG TCTTACACCA CACATTTGCA
  ATATTAAAAT GCTTTGGCTT CTGATGAACT CAAAATATGT TTAAACCGGG TGTGGTGGCT
  CATGCCTTTA ATCCCAGCAC TTGGGAGGTA GAGGCAGGCA GATTTCTGAG TTTGAGGCCA
  GCCTGGTCTA CAGAGTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39040715	mCV22548547	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss137738390	ENSMUSSNP2043967	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29223766					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52653313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4597	CpG island 4597	1495 bp distal
Gm23296	predicted gene, 23296	1939 bp upstream
Gm35239	predicted gene, 35239	within coordinates
Gm59577	predicted gene, 59577	721 bp upstream
Rr369517	regulatory region 369517	1547 bp downstream
Rr403284	regulatory region 403284	1813 bp downstream
Rr466027	regulatory region 466027	1648 bp distal
Rr466028	regulatory region 466028	870 bp distal
Tssr113445	transcription start site region 113445	1108 bp upstream