rs29223873 SNP Detail

Summary

• ID
  rs29223873
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58296350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAGGGCT CTTCATGTCC CAGCCCCACA ACGGTTACTA
  TGGTTACTAT GACCCACCAA GTGACATAAC AGCTTCTGGG GTCAGAGAGT CTCAACACTG
  M
  CACACACAGA ATGTGATTTT TACAGAGTCG CCAAAAAGCC TCTGCAAGCA GGTGTTGTCC
  GGCACAGAAT CAAGAAGGAA CCTGAGGTAC GGAGAAGAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39041115	mCV24562267	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss149066080	ENSMUSSNP1946591	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss324352926	CHEV_13_58249897	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29223873					SNP	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58296350 () rs orientation: forward

Symbol	Name	Function Class
1700066J03Rik	RIKEN cDNA 1700066J03 gene	within coordinates
Cpgi5721	CpG island 5721	56 bp proximal
Gm48295	predicted gene, 48295	within coordinates
Rr480978	regulatory region 480978	within coordinates
Rr480979	regulatory region 480979	10 bp proximal
Rr480980	regulatory region 480980	571 bp proximal
Tssr120063	transcription start site region 120063	12 bp downstream
Tssr120064	transcription start site region 120064	2 bp upstream
Tssr120065	transcription start site region 120065	17 bp upstream