rs29224259 SNP Detail

Summary

• ID
  rs29224259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:103469471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCTTC CATCTTTGCT
  TGGCTAGAAC TTGCCTCTGC AAGATCCGGC CTCTACTTCC AGGCTAGATG CCCAGGGGGC
  TAAAGCCAGG ACCCCGGGCT CTGTTTACTT CTTCTAAGGA CAAAGGCAAT TGTTTCCTAC
  TGCTAATCCC AGCAGAGACC GGGGAAATAC CAGTCTGGCA CGGCGGAATT AATTTCACAC
  R
  GAAGACTACG CTAGGGTCAT GTTTTATTTA TGGTCCTGTC TGATCAAGAT GATTTCTCCC
  ACAAGAGATG TCCAAAGCAA ACAATCTTAA AGACTTGGAG AATCTTCCTT TCCTGTCTTC
  CAAAGTAAGA GGGGAAAGGG GCGGAGGGGG GCGGGGGTGA GAAGAAAACC AGAGATAGCA
  ACCTAGTGGA TTACAAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39041946	mCV25108923	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss145124097	ENSMUSSNP2788515	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29224259					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103469471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6053	CpG island 6053			325 bp proximal
Gm61190	predicted gene, 61190			1820 bp downstream
Gm61201	predicted gene, 61201			within coordinates
Mast4	microtubule associated serine/threonine kinase family member 4			Intron
				Noncoding-Transcript-Variant
Rr485329	regulatory region 485329			1018 bp proximal
Rr485330	regulatory region 485330			1219 bp proximal
Tssr120897	transcription start site region 120897			413 bp downstream
Tssr120898	transcription start site region 120898			374 bp downstream
Tssr120899	transcription start site region 120899			355 bp downstream
Tssr123874	transcription start site region 123874			1466 bp downstream