rs29224294 SNP Detail

Summary

• ID
  rs29224294
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60801012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCTCATG GAGGGGCCTG
  TGAGAGCCAT GTGGTGGGAG GGTCAGTTGG GGCCTTCTCT GTGTGGTGCC TTGCTGCCTG
  TGAATGGACT CCTGATTGGC AGGAGGAGAG GCTAAACCAG ACTGTACAGA CCCTGGCCGC
  AGCACCTCTG CCTAGTGGGG GACTCATGGA TTCACACTCA TTTTAGCTGT TCATTGAAAA
  W
  TTTTCATACT TGGGGAACTG AAGGTGGTAC AGGGTCCCCT CTTCAAGAAG GCCTGGGTTA
  ATTACGATTT TCTGCATATA GCAATGAACA GACCCTCTTC CCTTCTCTCT ACTAAATAAT
  AGCCAGCTCT GAGAACCAGG CTGCCAGCCT GAAGTTGGTG CTGTCCAGTC TGATTCACTT
  GCTCTCTGAA CAAGGTGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39042040	mCV23002635	ABI	CRAMUS_MOUSE	f	SNP		A	A					T
ss61825836	NES17748943	PERLEGEN	MM_PANEL2	f	SNP	A		A	T	T	T	T	T	T	A		A	A		A
ss149094366	ENSMUSSNP6580419	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					T
ss324366838	CHEV_13_60754559	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29224294					SNP	A	A	A	T	T	T	T	T	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61825836	NES17748943	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60801012 () rs orientation: forward

Symbol	Name	Function Class
Dapk1	death associated protein kinase 1	within coordinates
Rr273140	regulatory region 273140	789 bp proximal
Rr276884	regulatory region 276884	1589 bp proximal
Rr284608	regulatory region 284608	within coordinates