rs29224347 SNP Detail

Summary

• ID
  rs29224347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT CTTAGAAGCT GAGTTCAAAG
  Y
  CAGAACTCAC ACAACGTAAG GAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39042143	mCV23769154	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss144934152	ENSMUSSNP6256728	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss324480470	CHEV_13_93122623	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29224347					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1705 bp proximal
Msh3	mutS homolog 3	within coordinates
Rr403895	regulatory region 403895	1602 bp downstream
Rr403896	regulatory region 403896	1832 bp upstream
Rr483661	regulatory region 483661	1568 bp proximal
Rr483662	regulatory region 483662	1849 bp proximal
Rr483663	regulatory region 483663	1999 bp proximal
Tssr123429	transcription start site region 123429	1835 bp downstream