rs29224658 SNP Detail

Summary

• ID
  rs29224658
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98398521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT TTTAGGTCTG GCCAACCAAC
  S
  GACAAAGCAG AAGATATTCT ATAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39041596	mCV24936479	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss145048339	ENSMUSSNP2878304	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss324499145	CHEV_13_99031968	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29224658					SNP	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98398521 () rs orientation: forward

Symbol	Name	Function Class
Ankra2	ankyrin repeat family A member 2	1063 bp upstream
Cpgi5999	CpG island 5999	663 bp proximal
Rr281816	regulatory region 281816	within coordinates
Tssr120794	transcription start site region 120794	1092 bp upstream
Tssr120795	transcription start site region 120795	1174 bp upstream
Tssr120796	transcription start site region 120796	1249 bp upstream
Tssr120797	transcription start site region 120797	1313 bp upstream
Tssr123622	transcription start site region 123622	933 bp downstream
Tssr123623	transcription start site region 123623	1013 bp downstream
Utp15	UTP15 small subunit processome component	within coordinates