rs29225406 SNP Detail

Summary

• ID
  rs29225406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12475542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTTCT TCAACCAGCC
  AAATTAAGTA AGTTGAGGGT GGGGTGGGGG TGGCAGAGTT ACTCCGGGGA ATACCAAATG
  CAATGTTTTG CATCAGCCCG GTTTTGAAAG ATAAGAGCGC CCCCTCGGCA CTGCGCCCTG
  CCCACTGAAT CATTTACTAC CTCTAGTCCT GATGACTCAA ACCAGAACCA AGCCAGAAAA
  Y
  GAAACTAGAG TTTCCTGTCT TTTACTTCCT ACAGTTCCGC CAGGCTGTAG ACAATAGGCA
  CTCGCCAAAT CTCTTATTTT ACCGGAGAAA AGAAAATTGC ATCTCTCTTG GTTACACCCC
  TAAAAACCAC CCTAGACCCC TACCTAGTAT CTGTCACTAA CTCATTTTAT TCAAATCCTC
  TGAGCCTTTA ATTCTGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39042806	mCV22708144	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148681946	ENSMUSSNP4151753	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29225406					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12475542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	298 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	within coordinates
Rr369647	regulatory region 369647	488 bp upstream
Tssr118345	transcription start site region 118345	9 bp upstream
Tssr121451	transcription start site region 121451	1535 bp upstream
Tssr121452	transcription start site region 121452	1379 bp upstream
Tssr121453	transcription start site region 121453	438 bp downstream
Tssr121454	transcription start site region 121454	749 bp downstream
Tssr121455	transcription start site region 121455	771 bp downstream
Tssr121456	transcription start site region 121456	877 bp downstream
Tssr121457	transcription start site region 121457	901 bp downstream