rs29225434 SNP Detail

Summary

• ID
  rs29225434
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTGCC TCTGCATTCC
  AAGCGCTGGG ATTAAAGGCA TGTGCCACCA TGCCTGGCCT TAAATGAAAT AATTTTAAGT
  GATCAGTGCA GGAATTATTT AAAAAATATG TAAGGAGGAA ATTACATGAA GTTTCCTGTT
  AAAAATACTA AAACTGTAAG TGTGGTGGCA CAATACCTGT GATCGAAGCC ACTTGTGAGC
  R
  AGCCTGCGAC AGGAAGAACA ATTGGACCCT AGCCTAGGTG AGTTAGATCC CGTGTGGCAG
  GCAGTTCACA TAAGAATGGC TCCCATAGGT TCATAGGTTT GAATGCTTAA TCACCAAAGA
  GTGGAACTAT TTAAAAGGAT TAAGAGGTAT AGCCCAAGCC AGGCCCAGTG CCTCTCCCTT
  CCTGCGGCCT GGGAATCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39043207	mCV22708365	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148681895	ENSMUSSNP5154621	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29225434					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	1195 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	155 bp proximal
Rr369646	regulatory region 369646	819 bp upstream
Rr369647	regulatory region 369647	1385 bp upstream
Tssr118345	transcription start site region 118345	906 bp upstream
Tssr121451	transcription start site region 121451	638 bp upstream
Tssr121452	transcription start site region 121452	482 bp upstream
Tssr121453	transcription start site region 121453	1335 bp downstream
Tssr121454	transcription start site region 121454	1646 bp downstream
Tssr121455	transcription start site region 121455	1668 bp downstream
Tssr121456	transcription start site region 121456	1774 bp downstream
Tssr121457	transcription start site region 121457	1798 bp downstream