rs29225720 SNP Detail

Summary

• ID
  rs29225720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46657018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG ACTTCGATTT GCTGGGGTTT
  Y
  GTTAGAATAC AAGCCTGCTG AGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39043226	mCV24524766	ABI	CRAMUS_MOUSE	f	SNP		T	C			T
ss51103903	NES14353404	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		C	T		T	T	T		T
ss148973665	ENSMUSSNP2089971	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss324333704	CHEV_13_46598911	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29225720					SNP	T	T	C	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103903	NES14353404	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46657018 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	909 bp distal
Gm35110	predicted gene, 35110	1617 bp upstream
Gm61509	predicted gene, 61509	within coordinates
Rr478915	regulatory region 478915	1684 bp distal
Rr478916	regulatory region 478916	1583 bp distal
Rr478917	regulatory region 478917	1366 bp distal
Rr478918	regulatory region 478918	627 bp distal
Rr478919	regulatory region 478919	512 bp distal
Tssr119597	transcription start site region 119597	1657 bp downstream
Tssr119598	transcription start site region 119598	1626 bp downstream
Tssr119599	transcription start site region 119599	1494 bp downstream
Tssr119600	transcription start site region 119600	1435 bp downstream
Tssr119601	transcription start site region 119601	1402 bp downstream
Tssr119602	transcription start site region 119602	1355 bp downstream
Tssr119603	transcription start site region 119603	628 bp downstream
Tssr122343	transcription start site region 122343	748 bp upstream