rs29226210 SNP Detail

Summary

• ID
  rs29226210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24025479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG TAAAGACCTT AGTTAACTTT
  Y
  CAGCACCCAC GATGAAAGCT GGGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39043299	mCV22701999	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148809508	ENSMUSSNP2230045	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss324292310	CHEV_13_23933365	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29226210					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24025479 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr475961	regulatory region 475961			1954 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3			Intron
				Noncoding-Transcript-Variant
Tssr4011	transcription start site region 4011			1868 bp downstream
Tssr4012	transcription start site region 4012			1764 bp downstream
Tssr118877	transcription start site region 118877			1909 bp downstream
Tssr118878	transcription start site region 118878			1876 bp downstream