rs29226940 SNP Detail

Summary

• ID
  rs29226940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAACAGC ATCGAGAATA
  CTGCACTGTG TAAGTACTTA GCACAAAGAA CAGGCACATA ATTCAGAGAC AATCAATAAT
  TACTGGAGGG CATATTAATC TGATACTTAC AAGCTGTGGG TGCATGGCAG GGAAACGCTA
  ACACGCTCTG TTTTCTGTAG TTAAATTACT ACTTGTCTAG AAAAGCAGGA AACTCGTCAC
  K
  TCCTGTGAAA ACACTTAAGA TCAGAACTCT GGAGTCTGAG CAGAGGTGCC AAAGTCAGTG
  TTCATTGACA CCGTGTGGTG TGGCAACAGG CACAGGGCAG AATACACACT TTGCATGCTC
  AGAGCCAAGG CTGCAGCGAA GCCACATGAT GCCCCTCAGG CGCGTGCCAC CAGCCACCAG
  CGACAGCAAC ACCGTGAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39047226	mCV23235851	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss145238582	ENSMUSSNP626404	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29226940					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574643 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	31 bp upstream
Gm59881	predicted gene, 59881	1245 bp upstream
Gm59893	predicted gene, 59893	719 bp downstream
Rr369776	regulatory region 369776	1392 bp upstream
Rr395952	regulatory region 395952	88 bp upstream
Rr403991	regulatory region 403991	1873 bp upstream
Rr486370	regulatory region 486370	77 bp distal
Rr486371	regulatory region 486371	within coordinates
Rr486372	regulatory region 486372	766 bp proximal
Rr486373	regulatory region 486373	1267 bp proximal
Rr486374	regulatory region 486374	1922 bp proximal
Tssr121117	transcription start site region 121117	39 bp upstream
Tssr121118	transcription start site region 121118	118 bp upstream
Tssr124051	transcription start site region 124051	47 bp upstream
Tssr124052	transcription start site region 124052	1878 bp downstream