rs29227254 SNP Detail

Summary

• ID
  rs29227254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75986953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA GCCACCTCAG CCATGCAGCC
  R
  GGCCGCTTCT CCGTTGGCAG AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39047131	mCV22680281	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss52665271	NES15473307	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G		A	G	G	G		G
ss144639036	ENSMUSSNP6604961	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss324437218	CHEV_13_75976282	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29227254					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665271	NES15473307	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75986953 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	1051 bp upstream
Rr482792	regulatory region 482792	974 bp distal
Rr482793	regulatory region 482793	544 bp proximal
Tssr120401	transcription start site region 120401	1040 bp upstream
Tssr120402	transcription start site region 120402	1063 bp upstream
Tssr120403	transcription start site region 120403	1168 bp upstream
Tssr120404	transcription start site region 120404	1237 bp upstream