rs29227291 SNP Detail

Summary

• ID
  rs29227291
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53626735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAA AACAAGTCAC CGCCTTTAGT
  S
  GGAGAAGCCA TGACTTTCTG CGCCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39046038	mCV22986318	ABI	CRAMUS_MOUSE	f	SNP	C	C	G			C	C
ss61805334	NES17735851	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G		C	C	C		C	C	C	C
ss149017736	ENSMUSSNP2794196	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G				C
ss324342434	CHEV_13_53568068	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29227291					SNP	C	C	G	C	G	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805334	NES17735851	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53626735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	within coordinates
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	13 bp downstream
Tssr122587	transcription start site region 122587	36 bp downstream
Tssr122588	transcription start site region 122588	101 bp downstream
Tssr122589	transcription start site region 122589	123 bp downstream