rs29227449 SNP Detail

Summary

• ID
  rs29227449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36394144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGGAACC TACTCCTGAC ACCTTGAAGT TCAATCCCCA
  GGACCTGTCA CACTAGCTGT GATGGTTTGT ATTTTCTTGG TCCAGGTAGC TCAGGGCTTC
  M
  AGAGTCTTTA AGGTGCTTGG AAATGTGAAT ACTAACGAAA CACCTGAAAA GAATGTGTTT
  CTTTTTTTTT ATTCTTAAAA TGTGATGGGA AAATAAACT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39047236	mCV22952778	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		A
ss51094131	NES14363059	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		A	A	C	C		A	C	C	A		A
ss148872086	ENSMUSSNP4282542	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss324315985	CHEV_13_36302030	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29227449					SNP	C	C	A	A	A	A	A	C	A	A	C	C	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094131	NES14363059	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36394144 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	within coordinates
Rr279014	regulatory region 279014	605 bp distal
Rr286029	regulatory region 286029	789 bp proximal