rs29227456 SNP Detail

Summary

• ID
  rs29227456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55566859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATTTTC TTTTTTTTTT TTTTTAAAGA TTTATTTATT
  AATTATATGT AAGTACACTG TAGCTGTCTT CAGACACTCC AGAAGAAGGC GCCAGATCTC
  R
  TTACAGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCTGGA CCTTCGGAAG
  AGCAGTCGGG TGCTCTTACC CACTGAGCCA TCTCACCAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39046342	mCV22796027	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss149036831	ENSMUSSNP2856410	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29227456					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55566859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	471 bp distal
Cpgi5670	CpG island 5670	1076 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	554 bp distal
Rr480461	regulatory region 480461	1631 bp proximal