rs29227551 SNP Detail

Summary

• ID
  rs29227551
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34272996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTTACCA GCAGCTTCAT TGTAGTACAC ACTGATCCTC
  TCCAGCTGCA AGTCACTGTC GCCATGGTAA CTGCCAGTGG GGTCGATGCC AGGTTCATCG
  M
  TTATCACATC CCAAAACTGA AATGACAATC CCAATCATGC TTAGAATCTC TCTGTCATCA
  GAAAGGTCTC TGTCAGACAG CAGGGCAAAA GCCTAGTGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39045448	mCV22533511	ABI	CRAMUS_MOUSE	f	SNP		A	C					A		C
ss51083381	NES14363089	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	A	C		C	A	A	C		C
ss148857486	ENSMUSSNP5336106	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss324313055	CHEV_13_34180882	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29227551					SNP	A	A	C	C	C	C	C	A	C	C	A	C	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51083381	NES14363089	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34272996 () rs orientation: forward

Symbol	Name	Function Class
4930447K03Rik	RIKEN cDNA 4930447K03 gene	within coordinates
Gm47065	predicted gene, 47065	within coordinates
Gm61046	predicted gene, 61046	1687 bp upstream
Rr281206	regulatory region 281206	within coordinates
Tssr119219	transcription start site region 119219	1689 bp upstream