rs29229229 SNP Detail

Summary

• ID
  rs29229229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53614784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTG CTTTCCTGGA ATTCTCAAGT
  Y
  CAGGATCATA TTCCCCTCAG CCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39047400	mCV22985528	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss324342363	CHEV_13_53556117	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29229229					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53614784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	1155 bp proximal
Gm33763	predicted gene, 33763	1321 bp upstream
Rr388456	regulatory region 388456	57 bp upstream
Rr480050	regulatory region 480050	890 bp proximal
Rr480051	regulatory region 480051	1281 bp proximal
Rr480052	regulatory region 480052	1374 bp proximal