rs29229802 SNP Detail

Summary

• ID
  rs29229802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36392470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGAGAA GGCCGGAAAG
  AAACACTGGG TAGCTTACTC TGTGTTGAAG CAAACTTGGG GATTTCACCT ATGCCTTCAG
  AATGAATGGA GGAAGAAAAG AATAATACAG AAAAAGGAGT AATGTATAAA AATATTTAAG
  TTCAAAGACA TCAGGATGAA AAGAAAACAA GTCCAAATTA TGACATTAGC ATCCGTTCTC
  R
  TGTATGAGTT TCCACACTCT AGAGTGGTGT GAAGGACTGT AAAGATTGTT CAGCGAATGC
  TTCAGCAAGG TGTCAGATGC ACCAGTATTA ACATTAGAAG CAGAATTTAA AGGAAAAAAG
  AAAGATAAAT GTGCATAAGC CCCAAATAGA TAACCTAAGA AGCCTTCTGA ATTATGAACT
  TTCATCTGCC CACTGTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39046909	mCV22952752	ABI	CRAMUS_MOUSE	f	SNP		A			G	G
ss51094137	NES14363069	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A		G	G	G	G	G	G	A
ss148872052	ENSMUSSNP735214	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29229802					SNP	G	A	A	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51094137	NES14363069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36392470 () rs orientation: forward

Symbol	Name	Function Class
Fars2	phenylalanine-tRNA synthetase 2, mitochondrial	within coordinates
Gm40912	predicted gene, 40912	within coordinates
Rr279014	regulatory region 279014	900 bp proximal
Rr283246	regulatory region 283246	1271 bp distal