rs29229870 SNP Detail

Summary

• ID
  rs29229870
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:46656657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGACTTGT ATTTAGAATT
  AGGTCTAAAA AGTTTACCAA GTGGAGGTGA ACTTTGTACA GCCAAGACTT GCGTCTTGGC
  CTGAGTAATC AGGAGAAGGC AGAAACAAAC GGAAAAAAAA AAAAAAAAGA AAAAGAAAAA
  GAAAAAGAAA AAAGAAAAAA AGGGGGGGGG GAGTTTATCA GAATTGCTTG CAGAGAGAGC
  M
  CTGCCTGTTC GTTTGGCTGC TTGGTTTGTT GGTAGACAGA GCTTTGCCAT GGAACCCCAG
  GCTGACCTCA AACTGTTAGC AATCATTCTG CTTCCGAGCT GAGATTACAG GTGTGCTCCT
  CTGCTTCCGA GAGGCGGACT TACTCTGTAC CCAGACTAGC CAGGAACTCG CCATTAGCCC
  AGGTTGACTT CAAACTCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39047489	mCV24524755	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					A		A
ss51103907	NES14353426	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		A	A	A	A	A	A	A	A	A
ss148973649	ENSMUSSNP3882674	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29229870					SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103907	NES14353426	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46656657 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	Intron
Cpgi5539	CpG island 5539	548 bp distal
Gm35110	predicted gene, 35110	1256 bp upstream
Gm61509	predicted gene, 61509	within coordinates
Rr478915	regulatory region 478915	1323 bp distal
Rr478916	regulatory region 478916	1222 bp distal
Rr478917	regulatory region 478917	1005 bp distal
Rr478918	regulatory region 478918	266 bp distal
Rr478919	regulatory region 478919	151 bp distal
Tssr119597	transcription start site region 119597	1296 bp downstream
Tssr119598	transcription start site region 119598	1265 bp downstream
Tssr119599	transcription start site region 119599	1133 bp downstream
Tssr119600	transcription start site region 119600	1074 bp downstream
Tssr119601	transcription start site region 119601	1041 bp downstream
Tssr119602	transcription start site region 119602	994 bp downstream
Tssr119603	transcription start site region 119603	267 bp downstream
Tssr122343	transcription start site region 122343	387 bp upstream