rs29229954 SNP Detail

Summary

• ID
  rs29229954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103471355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA ATTAGGCGGG AGGATTCGCG
  Y
  GAAAACGGAA GCGCGCGGCC AGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39046712	mCV25108946	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss145124117	ENSMUSSNP2298120	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss324510571	CHEV_13_104124927	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29229954					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103471355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	within coordinates
Gm61190	predicted gene, 61190	within coordinates
Gm61201	predicted gene, 61201	1777 bp downstream
Mast4	microtubule associated serine/threonine kinase family member 4	350 bp upstream
Rr485329	regulatory region 485329	845 bp distal
Rr485330	regulatory region 485330	within coordinates
Rr485331	regulatory region 485331	1096 bp proximal
Tssr123874	transcription start site region 123874	347 bp upstream
Tssr123875	transcription start site region 123875	974 bp downstream
Tssr123876	transcription start site region 123876	1095 bp downstream
Tssr123877	transcription start site region 123877	1114 bp downstream