rs29230033 SNP Detail

Summary

• ID
  rs29230033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCTTAGC TGCACAGTGA GTTCCGAGGT CAACCAGGCT
  ACACGAGAGC TTATCTCAAA AAGCAAAACA AAAAAGTGTC AGCCCTGGAT TCCTGACATC
  R
  CCAGAAAGAG TGGCTTCAGA ACAGCTTGGA ACTTGTGTTT TGATCTCCAC TACAGATCAG
  GGGCTTTGGG GCTGCAGGTC ATCTTCAGAT TAAACAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39048139	mCV23287417	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss49116820	NES12421969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	A	G	G	G
ss149079720	ENSMUSSNP423566	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29230033					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116820	NES12421969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788769 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Rr481236	regulatory region 481236	1214 bp distal
Rr481237	regulatory region 481237	1592 bp proximal
Tssr4093	transcription start site region 4093	718 bp upstream
Tssr122874	transcription start site region 122874	783 bp upstream
Tssr122875	transcription start site region 122875	766 bp upstream