rs29231560 SNP Detail

Summary

• ID
  rs29231560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56283786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCAAGC GTCTGCTGTG
  AGCACCTACT GTGTGTCTGG TGTCCCCTTG TCCCCAGTAG CCTCGTCCAC AAAGAGGGAG
  GGTAGAACAA TTGCTGTGAC CAGGGATCTT CTTCTGCCCG GTCAGCACCA ACTCCGCGCC
  TCAATCCAGC CTCCTGACTT TTTAAATACA AGGCAGCTGT GTGCCCCAAG ATCAGCTACC
  K
  TAGCTCAACT CCCTTGATCA GTGGGATTCT ACAGAGCTGG CCTCAAAGTC TGGTCTTGCT
  TTGCTCGTGG AATCGGTTAG CTACCTCCAC CAAGCAAACG TTTGTTGACT ACTGGCTCCA
  AGTGGAGACT TACTGATTTA AACAGTTGAT ACTTTTATTA CATATTAAGG TGGTGGGGTG
  GGTGTCAGCC AGAGAAAGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39048699	mCV23265405	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss149040879	ENSMUSSNP7223283	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29231560					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56283786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	within coordinates
Macroh2a1	macroH2A.1 histone	347 bp upstream
Rr480641	regulatory region 480641	1577 bp distal
Rr480642	regulatory region 480642	454 bp distal
Rr480643	regulatory region 480643	within coordinates
Tssr122739	transcription start site region 122739	557 bp upstream
Tssr122740	transcription start site region 122740	535 bp upstream
Tssr122741	transcription start site region 122741	465 bp upstream
Tssr122742	transcription start site region 122742	435 bp upstream
Tssr122743	transcription start site region 122743	318 bp upstream
Tssr122744	transcription start site region 122744	305 bp upstream
Tssr122745	transcription start site region 122745	285 bp upstream
Tssr122746	transcription start site region 122746	163 bp upstream
Tssr122747	transcription start site region 122747	125 bp upstream
Tssr122748	transcription start site region 122748	58 bp upstream
Tssr122749	transcription start site region 122749	17 bp upstream
Tssr122750	transcription start site region 122750	109 bp downstream
Tssr122751	transcription start site region 122751	1203 bp downstream