rs29231857 SNP Detail

Summary

• ID
  rs29231857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46120826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCACTC TATTTTTAGA
  CATCTTATAT TTAGAGAATT TTCAAGGGGA AAAAACCTCC TAATATTGTA ATTATTACGT
  TGGTGCAAGC AGTTAATTTG CATTATTTTA ACAACCTTAA ACATATTAAA ACACATAATT
  CATATTAGAC GTAGTCGATT AATTTAAATG TTCCCTGAAG AAAGCTAAAT ATGTACATTA
  Y
  CCATACAGTA AAAATAATTA ATAAGAAATG TGTTGTTTAC TTTCCTAACC ATTAAGATTA
  AAGCCATAAA CACTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCA CACACATACA
  CACACACACA CACACACCTA CAGCTATTGC TTCCTGCAAG TTCCAACACA AACATAATAC
  TCATAGAGCA GTTTCCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39049635	mCV22824121	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148968817	ENSMUSSNP6818145	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29231857					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46120826 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	842 bp downstream
Cpgi5536	CpG island 5536	1047 bp distal
Gm56575	predicted gene, 56575	1054 bp upstream
Rr478836	regulatory region 478836	1065 bp distal
Rr478837	regulatory region 478837	1108 bp distal
Rr478838	regulatory region 478838	564 bp distal
Rr478839	regulatory region 478839	578 bp distal
Rr478840	regulatory region 478840	1847 bp proximal
Tssr119585	transcription start site region 119585	1874 bp downstream
Tssr122341	transcription start site region 122341	1025 bp upstream