rs29231936 SNP Detail

Summary

• ID
  rs29231936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43158309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATC TAAGCGGTGA TTTCACCATG
  R
  TTCCATGGAA TATATTTAAG TGACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39049532	mCV22967215	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss148934448	ENSMUSSNP6742939	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29231936					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43158309 () rs orientation: forward

Symbol	Name	Function Class
Gm15809	predicted gene 15809	within coordinates
Gm61192	predicted gene, 61192	1902 bp downstream
Phactr1	phosphatase and actin regulator 1	within coordinates
Rr388334	regulatory region 388334	within coordinates
Rr478223	regulatory region 478223	20 bp proximal