rs29232328 SNP Detail

Summary

• ID
  rs29232328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95902513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGATAG AGCTCAAGGC
  CAGCCTGGGC AACATAGCAA ACAAGATCCT GCCTCTAAAA TAGAAAGGGG TAGGACAAAC
  AAACAAACAA AAAGACAGAA AAGGTATATT CTGGCTCAAT TTCGGAGATT TCTGTCCAAA
  ACTGGATCGA CCCATGGGGG TAGACTTCTT GTAAGGGTAC CAGATAGCAA TGCCAGAGGG
  Y
  GTATGGTGAA ACAAGTTGTT CAATTCATGG ACAGAAAACA CAACAGAGAG ATGACATTGT
  GGAGGGGTCT GTCCCACAGT GCCACCCCTC CACACACACC AAGGCGTCTC CTAACACAGG
  TGTAGAGCAC TTCTCAGTGG ATATGCCCCG AGACTGAGCC TCTCCGGCAC GGATCCCTAA
  GTCCGTTCTG CACCAAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39051424	mCV24355083	ABI	CRAMUS_MOUSE	f	SNP	T	T			C		C
ss51137169	NES14338998	PERLEGEN	MM_PANEL2	f	SNP		T	C	C		C	C	C	C	C	C	C	C	C
ss144993823	ENSMUSSNP1494378	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29232328					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51137169	NES14338998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95902513 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	within coordinates
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	1646 bp distal
Rr484142	regulatory region 484142	904 bp distal
Rr484143	regulatory region 484143	458 bp distal
Tssr120725	transcription start site region 120725	867 bp downstream
Tssr120726	transcription start site region 120726	641 bp downstream