rs29232381 SNP Detail

Summary

• ID
  rs29232381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46092159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAAGCT TGAAAAAAAA
  ATAAACTAAT TAATGACAAG TGGATTTTCC TCCATGGAAA TAACAGAACA AAGGAGAGAT
  GGATGGTGTC ATAAGGACCG AGGTGCAGCT TTATCTTGGA CCGGGAGCAT TGAACAGAGT
  ATCTTCAGCT CGCACCTACA AAATGGACTC AGATGAGACG AGAAGATGAA CAGGAAATGC
  R
  GACCCCTTGC ACTCACTCTG AGCCACAGGA AATCCTGGAG CAGAATTATA AAGAAACAAC
  AGTCTGGCCC TAAGACAGAA AAGATGACCA ATGTAGAAAG AATGAGCAAA CCAAAGCTCT
  GTGTTGCCAT GGGAATTCAT TAAGAAAAAA ATATATTTAT TATGTGTGTG GACATTGGAT
  GAGGTCACAT GCCATCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39050427	mCV24562078	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss148968472	ENSMUSSNP2463604	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29232381					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46092159 () rs orientation: forward

Symbol	Name	Function Class
4930453C13Rik	RIKEN cDNA 4930453C13 gene	1773 bp downstream
Atxn1	ataxin 1	within coordinates
Rr478826	regulatory region 478826	1436 bp distal