rs29232424 SNP Detail

Summary

• ID
  rs29232424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23937037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT GGCCAAAAGT AATGGACTGT
  Y
  AGGCTTTATG TCATAAGCAT TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39052920	mCV22702801	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss47383705	NES11348038	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	C		C	C	T		C
ss148808157	ENSMUSSNP2836563	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss324291422	CHEV_13_23844923	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29232424					SNP	T	T	T	T	T	C	T	C	C	T	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383705	NES11348038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23937037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	1398 bp distal
Gm54518	predicted gene, 54518	1539 bp upstream
H2ac4	H2A clustered histone 4	1456 bp downstream
H3c2	H3 clustered histone 2	214 bp downstream
Rr403663	regulatory region 403663	1914 bp downstream
Rr403664	regulatory region 403664	668 bp downstream
Rr475938	regulatory region 475938	1918 bp distal
Rr475939	regulatory region 475939	1661 bp distal
Rr475940	regulatory region 475940	1424 bp distal
Rr475941	regulatory region 475941	777 bp distal
Rr475942	regulatory region 475942	615 bp proximal
Tssr118860	transcription start site region 118860	1968 bp downstream
Tssr118861	transcription start site region 118861	1936 bp downstream
Tssr118862	transcription start site region 118862	1847 bp downstream
Tssr118863	transcription start site region 118863	703 bp downstream
Tssr121747	transcription start site region 121747	844 bp upstream