rs29233378 SNP Detail

Summary

• ID
  rs29233378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100911768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTCCCAA TAAGCTGTAT
  GAACACTAAC ATTTAGATTT CATGCATTAC AAAATGTTTG GCTCCTATCT CTATTTAAAT
  ACGGAAAAAC TATGCTGTAG TTGAGCTGTA TGGCTCTTGC TACGCATACA CCAGACGCTG
  CTTTTCTTAG CTTGAAGAGT TCACCATAGG CAGTAGGATA AACTTGGTCC AGGCCTTAGA
  Y
  TAAAGTTTCT GGCCGCCAAA TTTTCTCTAA AAACTGCTGA CTGGGGAGCA TCATCGTCCT
  GGTAGGACGA TAAACAACCG AAGCTTCTGG TCAGCAAAGG GTCTTGGTCC TCAAGGTGGA
  CTGTGTCCTG TAACTTGGCG GTAGGTACTG CTCAGCCAGC CCGGACCACA GTGGCAAGAC
  AGCACCGGAG GCCGGGTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39053435	mCV23726398	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss145091310	ENSMUSSNP4207924	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29233378					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100911768 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	45 bp proximal
Tssr123809	transcription start site region 123809	543 bp downstream
Tssr123810	transcription start site region 123810	584 bp downstream