rs29233455 SNP Detail

Summary

• ID
  rs29233455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30949089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAGTCTT TCAGCAGCAT
  ACATTCAATA AGCAATGGAC CATTGGGTGT CTCATTTCAT TGTTTTATTT TTAAAAAGGA
  ACCTTTGACA AATAATACAC ATTACAGAAA ATGGAAGCAT TTTTCATAGA GAAGGTAAGA
  ACTGAAATGC ATTTTATGTT CGAATCCTCC TTGCTAGTAT TAGCCCCAAG AGTTCAGTCT
  R
  TCCTTTAAGC ATGTTTTAGT TTTCAATACA TATATATGAA GTTGCCCTTT CTTAGAGAGA
  GAGAGAGAGA TATGTGATGA CACTCTTATG TACCCAACTA TACAGATTTA CCTCATCTTT
  TGAGTGGCAT GTGGACTTCC ACTGCTATGT GCCTAGGTGC AGTTTAGACA TCTTCTTAGC
  TACCCATCCC AGCAGCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39051542	mCV22658566	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss49087319	NES12454093	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148829216	ENSMUSSNP1915721	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29233455					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087319	NES12454093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30949089 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	334 bp distal
Rr476644	regulatory region 476644	692 bp proximal
Rr476645	regulatory region 476645	1252 bp proximal
Tssr119108	transcription start site region 119108	974 bp downstream
Tssr119109	transcription start site region 119109	582 bp downstream
Tssr119110	transcription start site region 119110	533 bp downstream
Tssr119111	transcription start site region 119111	314 bp downstream
Tssr119112	transcription start site region 119112	265 bp downstream
Tssr119113	transcription start site region 119113	246 bp downstream
Tssr119114	transcription start site region 119114	218 bp downstream
Tssr119115	transcription start site region 119115	1066 bp upstream