rs29235030 SNP Detail

Summary

• ID
  rs29235030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100912261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTCTTC CCCACTGACA
  GGCCTAAAGC GGTGAAACTG ATGGTGCCGC AAGCTTCGGA GCCCTAAATC AGCCAGGGAA
  CCTGAATAGG AACCCTGAGC CTCCCGAGTG GGGGCGGATG CCCGCCGGGA GCACCTGAGC
  AGCAGGCTGA TACGGTCCTC GATACGCTCC TCCGCGGCCT GCGACAGACC CCGCTTCTCT
  Y
  CGCAGGCCTC AGCCCCGGCC TCAGACCTCT CCCGCGGCTG CTCCTCCATT GCAAAGGCCC
  GCAGGTTTGA ACGCCACAGA AAATAACCCA GCAGTTCTTC CCGCCACGAA ATTGGTTTCC
  GGAAGTTCCT ACCCTTCCGG AAGGGTCCCG CCCCTTCCGC CCTGAGTCCC TCCTTCTGCT
  TCTCCCCTTG CAGCGGGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39052790	mCV23726393	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss145091320	ENSMUSSNP3716625	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29235030					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100912261 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	within coordinates
Rr280869	regulatory region 280869	within coordinates
Tssr123809	transcription start site region 123809	50 bp downstream
Tssr123810	transcription start site region 123810	91 bp downstream