rs29235421 SNP Detail

Summary

• ID
  rs29235421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT AACAATGCTC CCCATAGACT
  Y
  GTATATTTAA ATGCTTAGTC ATCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39053410	mCV23234270	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss324460065	CHEV_13_85267310	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29235421					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	189 bp distal
Gm4076	predicted gene 4076	191 bp upstream
Rr388812	regulatory region 388812	within coordinates
Rr483357	regulatory region 483357	138 bp distal
Tssr4134	transcription start site region 4134	823 bp downstream
Tssr120547	transcription start site region 120547	1115 bp downstream
Tssr120548	transcription start site region 120548	1003 bp downstream
Tssr120549	transcription start site region 120549	936 bp downstream
Tssr123349	transcription start site region 123349	1066 bp upstream
Tssr123350	transcription start site region 123350	695 bp upstream
Tssr123351	transcription start site region 123351	601 bp upstream
Tssr123352	transcription start site region 123352	291 bp upstream