rs29235436 SNP Detail

Summary

• ID
  rs29235436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59732516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCCAGCT GCCTTCGCAG ACATTTTGGT TACCTGGTTC
  TTCTCTTACC CCTTCCCCTG GCCCCTTGGT CTCCCCGCTC TCCTCTCTGC TCTCCTCCCG
  W
  GAGCCGGCTC AGGGTCACAT TCCCTCTGGA CCCTTCTGGA TGTCTGACTC TGGCTATGCT
  CTCCTTCATA CCTACACTCA ACCTTCTCCT CCACCATAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39052010	mCV24570980	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149078806	ENSMUSSNP719954	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29235436					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59732516 () rs orientation: forward

Symbol	Name	Function Class
A230056J06Rik	RIKEN cDNA A230056J06 gene	within coordinates
Cpgi5739	CpG island 5739	335 bp proximal
Naa35	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	631 bp upstream
Rr369727	regulatory region 369727	within coordinates
Rr481226	regulatory region 481226	103 bp proximal
Rr481227	regulatory region 481227	604 bp proximal
Tssr120097	transcription start site region 120097	599 bp upstream
Tssr120098	transcription start site region 120098	646 bp upstream