rs29235533 SNP Detail

Summary

• ID
  rs29235533
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114953475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATT TTAAAAATTT TTACTGTTCA
  S
  TGCTGTGGAT TGTGACTTTA CACTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39051112	mCV24434091	ABI	CRAMUS_MOUSE	f	SNP	G	G	C	G	G
ss145319463	ENSMUSSNP1273150	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29235533					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114953475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	802 bp proximal
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	1232 bp upstream
Rr280966	regulatory region 280966	525 bp proximal
Rr404003	regulatory region 404003	1140 bp upstream
Tssr121205	transcription start site region 121205	1293 bp upstream