rs29235585 SNP Detail

Summary

• ID
  rs29235585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77277138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG GGAGAAAGTT GCTTTCATTA
  W
  TTCAAAGGAT TTTTTTTTTA ATTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss39051304	mCV22684955	ABI	CRAMUS_MOUSE	f	SNP		T	T		A
ss49119343	NES12423718	PERLEGEN	MM_PANEL2	f	SNP	T			T		A	T		T	A
ss144701528	ENSMUSSNP60393	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss324447413	CHEV_13_77268280	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29235585					SNP	T	T	T	T	A	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119343	NES12423718	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77277138 () rs orientation: forward

Symbol	Name	Function Class
Rr284990	regulatory region 284990	426 bp distal
Rr284991	regulatory region 284991	1864 bp proximal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates