rs29235780 SNP Detail

Summary

• ID
  rs29235780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30949379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCCAACT ATACAGATTT
  ACCTCATCTT TTGAGTGGCA TGTGGACTTC CACTGCTATG TGCCTAGGTG CAGTTTAGAC
  ATCTTCTTAG CTACCCATCC CAGCAGCCCA CTGAGTCTCG TGAACTAAAG TCACTTATAC
  ATCTTATAGA TGCAAAACAT TCTGGGGTAT ATTATCCCAA GGGAAGATGA AGGCAAAATC
  R
  GGAAGCACTC TTCCTGAGGC CCCAAGCCAC AGCTGTCCTC CTGGAGTATC TTAACCATAT
  CTGGCACTTC ACCAAGGTCC CTTGCCTGGT CCTGTATGAC CATGACTCTT CAGTCCATAA
  GCAGATGCTT TGTCTCAATT GCCATGTGAA GTCTTTTGGT TTTTGGTTTT TTTCCTTAAT
  GTTAAGCTGT TTTAACAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39052618	mCV22658576	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss49087318	NES12454096	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss148829220	ENSMUSSNP4535690	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29235780					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49087318	NES12454096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30949379 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	within coordinates
Rr476643	regulatory region 476643	624 bp distal
Rr476644	regulatory region 476644	402 bp proximal
Rr476645	regulatory region 476645	962 bp proximal
Tssr119108	transcription start site region 119108	1264 bp downstream
Tssr119109	transcription start site region 119109	872 bp downstream
Tssr119110	transcription start site region 119110	823 bp downstream
Tssr119111	transcription start site region 119111	604 bp downstream
Tssr119112	transcription start site region 119112	555 bp downstream
Tssr119113	transcription start site region 119113	536 bp downstream
Tssr119114	transcription start site region 119114	508 bp downstream
Tssr119115	transcription start site region 119115	776 bp upstream