rs29236899 SNP Detail

Summary

• ID
  rs29236899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64303958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG CAAGTACATG GTGGCTCACA
  R
  CCATCTGTAA TGGAATCCCT CTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39054017	mCV23508586	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss149161910	ENSMUSSNP4417520	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss324379434	CHEV_13_64257452	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29236899					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64303958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5774	CpG island 5774	1906 bp distal
Gm47513	predicted gene, 47513	1548 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	within coordinates
Rr273318	regulatory region 273318	358 bp distal
Rr281559	regulatory region 281559	1557 bp distal