rs29236954 SNP Detail

Summary

• ID
  rs29236954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91600375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATCTCTT TTAAATAGGG
  AAAAAGAAAC AGTTGTCATT TCTCCTCATT CTCTGTCTCT GTCTCTCTGT CTCTCTGTCT
  CTGTCTCTCT CTGTCTCTGT CTCTCTGTCT CTCTCTGTCT CTGTCTCTCT CTCTGTCTCT
  GTCTCTGTCT CTCTCTCTGT CTTGTTTTTT TGGAGACAGA GTTTCTCTGT ATAGCCCTGG
  Y
  TATCCTGGAA CTCACTCTGT AGACCAGTCT AGCCTTGAAC TCAGAAATCT GCCTGCCTAT
  GCCTCCCAAG TGCTGAGATT AAAGGCATGG GCCACCCCTG CCTGGCATTT CTCCTCTTAG
  TATCTTATAG CGAGCCATAG CGTATCCTTC AAAGTAGTAA AAATGAGAAG TAATGAGGAG
  CCTGCCTAAG GACGAGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39054261	mCV25443457	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss144922399	ENSMUSSNP6745334	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29236954					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91600375 () rs orientation: forward

Symbol	Name	Function Class
Rr277507	regulatory region 277507	within coordinates
Rr277508	regulatory region 277508	626 bp proximal