ACCAG TGAAGGGGCC AGAGGATGTC Y CAAACATGAG CTGTGTCTTA TCTAT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|---|
ss39055625 | mCV24334926 | ABI | CRAMUS_MOUSE | f | SNP | T | C | T | |||
ss145056186 | ENSMUSSNP6635307 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | T | |||
ss324500811 | CHEV_13_99461449 | CHEVERUD | SCREENING_POP | f | SNP | T | T | ||||
SNP Consensus Information | |||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
DBA/2J |
LG/J |
SM/J |
||||
rs29237649 | SNP | C | T | C | T | T | T |
Location: Chr13:98828002 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr281821 | regulatory region 281821 | 1798 bp proximal | ||||||
Tmem171 | transmembrane protein 171 | within coordinates | ||||||
Tssr120815 | transcription start site region 120815 | 810 bp upstream | ||||||
Tssr123632 | transcription start site region 123632 | 657 bp downstream | ||||||
Tssr123633 | transcription start site region 123633 | 701 bp downstream | ||||||
Tssr123634 | transcription start site region 123634 | 1221 bp downstream | ||||||
Tssr123635 | transcription start site region 123635 | 1231 bp downstream | ||||||
Tssr123636 | transcription start site region 123636 | 1265 bp downstream | ||||||
Tssr123637 | transcription start site region 123637 | 1295 bp downstream | ||||||
Tssr123638 | transcription start site region 123638 | 1625 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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