rs29238680 SNP Detail

Summary

• ID
  rs29238680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83722091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAAGAC TATAGTAAAT
  GCAGAAAAGA TTCCCACTTG TATGCTGTTT AAGACCATTT CTAAGACTAA ATGGGTAGAC
  TATTTAACAA TGTTGGATAC ATCATGTGTG TGCTTTGCAA ATTCTTTATC TATATGATCT
  TGGTGTCTTT ATAGTAGTGT CTTTGCCTTG TGAGTGTCTT AGTGTGTGTT GTTCATATAA
  M
  TTAAAAACTT TGAGACTGCT GCTAACATTG AAAACTGTGG CTGGAGTCGT AATCTTTGAC
  AAGCACGTCG TAATCATGGT GAAACTCACA CGTGGATGCC GTGAGGCCAA ACTGAGCTGC
  AGTTTAGGAG AAGGACATTG GGTAAAGGAG AGTGGATAGT CTTAGTGATT AAGCAGTGCT
  TAATCCACCA GAACTAATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39057726	mCV23228706	ABI	CRAMUS_MOUSE	f	SNP			A					C		C
ss61892671	NES17096054	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	C	C		C	C	C	C		C	C	A	C		A
ss144777090	ENSMUSSNP1368865	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C
ss324456696	CHEV_13_83713130	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29238680					SNP	A	A	A	C	C	C	C	C	C	C	C	C	A	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892671	NES17096054	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83722091 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	1723 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	1856 bp distal
Rr483253	regulatory region 483253	340 bp distal
Rr483254	regulatory region 483254	within coordinates
Rr483255	regulatory region 483255	836 bp proximal
Tssr4132	transcription start site region 4132	1894 bp upstream
Tssr120502	transcription start site region 120502	1615 bp downstream
Tssr120503	transcription start site region 120503	1582 bp downstream
Tssr120504	transcription start site region 120504	1559 bp downstream
Tssr120505	transcription start site region 120505	369 bp downstream
Tssr120506	transcription start site region 120506	503 bp upstream
Tssr120507	transcription start site region 120507	1167 bp upstream
Tssr120508	transcription start site region 120508	1653 bp upstream
Tssr123327	transcription start site region 123327	1962 bp upstream
Tssr123328	transcription start site region 123328	1854 bp upstream
Tssr123329	transcription start site region 123329	1818 bp upstream
Tssr123330	transcription start site region 123330	1026 bp downstream
Tssr123331	transcription start site region 123331	1681 bp downstream