rs29238701 SNP Detail

Summary

• ID
  rs29238701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96803307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT CATGTACAGG ACTATTCCAG
  Y
  GTTCTGCATA ATCCTGGAAA GTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss39055388	mCV24346394	ABI	CRAMUS_MOUSE	f	SNP	T	T	T			C		T
ss61944148	NES17104350	PERLEGEN	MM_PANEL2	f	SNP			T	T	C		C	T	T		T	C	C
ss145024486	ENSMUSSNP5534905	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss324494672	CHEV_13_97436754	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29238701					SNP	T	T	T	T	C	C	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944148	NES17104350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96803307 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	within coordinates
Rr281795	regulatory region 281795	293 bp proximal
Rr285480	regulatory region 285480	1730 bp distal
Rr285481	regulatory region 285481	1107 bp distal
Tssr123569	transcription start site region 123569	72 bp upstream