rs29239013 SNP Detail

Summary

• ID
  rs29239013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61501129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGTGAT AAAATCTAAA
  CTCCTTGGCT ATACATTATA TGTTAGTTGA TACAGCCAAA GACAGGGATC AGCCAGATCA
  TGTAAATGTA ACTTCTGGAG TATGATTCCC AGTTCCACTT AATGCTAGGA TAAGGCTTCT
  AAAGCTAGAG CTTCAGATTA GGGCCCCCTT GGACTTCTTC AACCGAAAAA AAAATCCTGC
  Y
  CAGCACCCAT GTAAGTGAAT TCACAATCCT CTCTAATTGG ATCTCTGGGA AAAATGGTGT
  CTTCTGGTAC GAAAAAGCAT CTGTCCCCAC AAAGAACTCA TTCATACAAA CACACAACTT
  ACAAATAATT GACAATAATA TTTTGTAAAG GTAAGAGGTT TTCCCAGTCA AACTCTAATC
  ACAGAAACCA GGACATAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39059140	mCV25104784	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss149102525	ENSMUSSNP4545838	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29239013					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61501129 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates