rs29239184 SNP Detail

Summary

• ID
  rs29239184
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75987147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GGACATGACT GTAGTCTGAC
  Y
  TCCTGTAAGA TACTCTGGTT CTACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss39058341	mCV22680292	ABI	CRAMUS_MOUSE	f	SNP		T	T			C		T
ss52665269	NES15473311	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		C		T		C	T		T
ss144639048	ENSMUSSNP6478945	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss324437220	CHEV_13_75976476	CHEVERUD	SCREENING_POP	f	SNP										T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29239184					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665269	NES15473311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75987147 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	857 bp upstream
Rr482792	regulatory region 482792	1168 bp distal
Rr482793	regulatory region 482793	350 bp proximal
Tssr120401	transcription start site region 120401	846 bp upstream
Tssr120402	transcription start site region 120402	869 bp upstream
Tssr120403	transcription start site region 120403	974 bp upstream
Tssr120404	transcription start site region 120404	1043 bp upstream