rs29239594 SNP Detail

Summary

• ID
  rs29239594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23705876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG ATGCGATAAA GTGATGAGAC
  Y
  GTATTTTTAA ACAGTCTAAT TAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39058550	mCV24452620	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T	C
ss47380288	NES11359630	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C			C	T		T	T	C	T
ss148805707	ENSMUSSNP4732563	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss324289677	CHEV_13_23613575	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29239594					SNP	C	C	C	C	C	T	C	T	C	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380288	NES11359630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23705876 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	164 bp upstream
Rr281116	regulatory region 281116	1475 bp distal
Rr281117	regulatory region 281117	within coordinates
Rr403645	regulatory region 403645	1906 bp downstream