rs29241241 SNP Detail

Summary

• ID
  rs29241241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGTAGCTG TGTGTGCTGA TCGAGTTTCT CAGCTCCTAC
  CCGAGTGCCA TCCGCCACCG CCTGCCCTTG GATGGATGCC TGTTGGTGCT CCTCACCGAC
  R
  GCCTGAATCT CATTGGTTTC CTCTGCACAT AGAACATAGG TGTGATTGCA AGAGCATTCT
  TTGTTTGGGG GTCTTGGGTG TGTGTGTGTC CGTGTTATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39059312	mCV23287391	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss49116821	NES12422093	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	G	A	A	A
ss149079700	ENSMUSSNP3581017	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29241241					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49116821	NES12422093	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788133 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	82 bp upstream
Tssr122874	transcription start site region 122874	147 bp upstream
Tssr122875	transcription start site region 122875	130 bp upstream