rs29241644 SNP Detail

Summary

• ID
  rs29241644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35124850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATGGTCTA CATGTTCCAG TCTGACTCCA CCCATGGCAA
  ATTTACCTGC ACAGTCAAGG CTGAGAATGG AAAGCTTGTC ATCAATGGAA AGCCCATCAC
  Y
  ATCTTCCAGG AGTGAGATCC TGCTAAAGTC AAATGGGTCG ATGCTGGTGC TGAGTATGTC
  ATGGAGTCTT CTGGCATCTT CACCACCACG GAAAAGGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss39060320	mCV24488242	ABI	CRAMUS_MOUSE	f	SNP	C	C	T			C		T
ss51085175	NES14364941	PERLEGEN	MM_PANEL2	f	SNP	C			T	C		C	T	C	C		C	C	C		C
ss148860491	ENSMUSSNP823205	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss324313974	CHEV_13_35032736	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29241644					SNP	C	C	T	T	C	C	C	T	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51085175	NES14364941	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35124850 () rs orientation: forward

Symbol	Name	Function Class
Gm8245	predicted gene 8245	within coordinates
Tex56	testis expressed 56	within coordinates