rs29242194 SNP Detail

Summary

• ID
  rs29242194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:35355906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCATCAGC GCAGATTAGG AGAGAACAGC CTGAGCCTTG
  GGTGAGGCTG TCTCCTTCAA AGACTCACTC CCTAGTGATT ATTTTCTGAC AGAAATACCC
  Y
  ACATTCTGAA GACTCCAGGG TCTCAGGATA GCTACACCAA CCAGGGAACA ATCGGTATAA
  ACATTTGGGG TACACTAACA CTTCAAATCA CAACTCCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39060841	mCV25144917	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T		C
ss51091121	NES14361630	PERLEGEN	MM_PANEL2	f	SNP			C	C	C		C	C	T	C		C	C		C
ss148862455	ENSMUSSNP3514949	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss324314281	CHEV_13_35263792	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29242194					SNP	T	T	C	C	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51091121	NES14361630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:35355906 () rs orientation: forward

Symbol	Name	Function Class
Rr275746	regulatory region 275746	within coordinates
Rr275747	regulatory region 275747	695 bp proximal