rs29242850 SNP Detail

Summary

• ID
  rs29242850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63284221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA TGAATGCCTT TCTCTAAAAG
  R
  AAAGAAGGTG AAATAGGCTG ATCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39060089	mCV25259512	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		G
ss61818465	NES17756629	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	A		G	G	G	G		G	G	G	G		G
ss149138205	ENSMUSSNP354607	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss324374657	CHEV_13_63237767	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29242850					SNP	G	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818465	NES17756629	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63284221 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	1894 bp downstream
Rr273239	regulatory region 273239	380 bp proximal
Rr276922	regulatory region 276922	1220 bp distal
Rr276923	regulatory region 276923	821 bp distal
Rr276924	regulatory region 276924	1780 bp proximal
Rr284651	regulatory region 284651	464 bp proximal