rs29243259 SNP Detail

Summary

• ID
  rs29243259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36917544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAATTA ATGTTTCCAT
  CCAGTATCAC ATAAGCGGAT TCACTAGTAC TTAAAACATT TGCATTTTGG ATGGAAAAAT
  ATAAACTTTA AAAAAGCCTC CCAACAGTGT AGCTGAGACT CACATTCCTT AACATGAAAT
  GGGGGGGGGG GCTAAATAAA TCCATCCAAT AAACCGCCAC AAACAAAAAT TACAAACCCA
  Y
  GAAAAGACAA AATGCGAACA CGTTAAACCA CTTTCCTGTA TAAAAATAAT AGAGATGCTA
  ATCTGCCAAA AATCACAGAC ACACATGACC CTGAAAAAGT ATATCAGTGA ATATTTGGTT
  GATTTATCCT TCTCGGAGTA GTCTGCGGTG CCCGGAGCAA ACGCTGCAGC TAAGATCTAG
  GGGGAGGGGC GGAGGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39062925	mCV24792187	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss148879316	ENSMUSSNP2716292	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29243259					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36917544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	1227 bp distal
Cpgi5451	CpG island 5451	1241 bp proximal
Gm56572	predicted gene, 56572	1318 bp upstream
Nrn1	neuritin 1	Intron
Rr477392	regulatory region 477392	1835 bp distal
Rr477393	regulatory region 477393	1334 bp distal
Rr477394	regulatory region 477394	within coordinates
Rr477395	regulatory region 477395	897 bp proximal
Rr477396	regulatory region 477396	1329 bp proximal
Tssr119271	transcription start site region 119271	1286 bp upstream
Tssr122097	transcription start site region 122097	696 bp downstream
Tssr122098	transcription start site region 122098	723 bp downstream
Tssr122099	transcription start site region 122099	801 bp downstream
Tssr122100	transcription start site region 122100	834 bp downstream
Tssr122101	transcription start site region 122101	856 bp downstream
Tssr122102	transcription start site region 122102	880 bp downstream