rs29243587 SNP Detail

Summary

• ID
  rs29243587
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:117386927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT AAGCAAGTGG AACATAAAAG
  S
  CACACTTTTA ATGGATAAAT TGACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39063423	mCV24416720	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				G		G
ss49147114	NES12469790	PERLEGEN	MM_PANEL2	f	SNP			C	G	G	G		G	G	G		G	G		G
ss145405732	ENSMUSSNP5538700	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss324543517	CHEV_13_118039198	CHEVERUD	SCREENING_POP	f	SNP											G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29243587					SNP	G	G	C	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49147114	NES12469790	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:117386927 () rs orientation: forward

Symbol	Name	Function Class
Emb	embigin	within coordinates
Rr270627	regulatory region 270627	1327 bp distal
Tssr121224	transcription start site region 121224	945 bp downstream
Tssr121225	transcription start site region 121225	672 bp downstream
Tssr121226	transcription start site region 121226	195 bp upstream