rs29244013 SNP Detail

Summary

• ID
  rs29244013
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111885932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATATAA ACTGCTAATT
  TTTACCTTTT CCCCCCTTTC TTTTGATAAA GACTTAGGAC AGGCTGATGG CTTGGATCTA
  TCTCTCTGCC TCCACTTCGG GAGTACTTCA ATTACAGTTG TGTGCCACCA AGCCAGATAA
  GAGCTATTAT CCCATAAACA GGTAAAGGAT GAATCTAAAT CATTTAAATC TACCTACTTT
  S
  TCATCATAGT AAAAGTCTCC CTTTCCCTCA CCTTAGCAAA TTCATGAATG ATTATTAAAA
  AAATGCAAAT TGATAGAAAA AAAAAGAAAT CCTAAAAATC TCTGACACTG AGTGAATGCA
  CACACCCATG ATCCCTTTCT GTCTAGAGAC AATGAGTGGA CGCACTCACA TCTTACAAAA
  GTGACACCCT TTTTCACCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39065740	mCV24613938	ABI	CRAMUS_MOUSE	f	SNP	C	C	G				C		C
ss51156731	NES14327274	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C		C	C	C	G	G	G	G	G	C
ss145218859	ENSMUSSNP6604612	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29244013					SNP	C	C	G	C	C	C	C	C	C	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51156731	NES14327274	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111885932 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1171 bp upstream
Tssr124032	transcription start site region 124032	960 bp upstream